diff --git a/.dockerignore b/.dockerignore index f07de3c..2d60064 100644 --- a/.dockerignore +++ b/.dockerignore @@ -5,7 +5,16 @@ .github .gitignore .pre-commit-config.yaml +.pytest_cache .readthedocs.yaml +.ruff_cache +.venv assets +build +dist docs tests +wheelhouse +**/__pycache__ +*.so +*.pyd diff --git a/.github/contributing.md b/.github/contributing.md index b14648a..9ee72d2 100644 --- a/.github/contributing.md +++ b/.github/contributing.md @@ -1,7 +1,7 @@ ## Environment Setup -1. We use [Poetry](https://python-poetry.org/docs/#installation) for managing virtual environments and dependencies. - Once Poetry is installed, run `poetry install` in this repo to get started. +1. We use [uv](https://docs.astral.sh/uv/getting-started/installation/) for managing virtual environments and dependencies. + Once uv is installed, run `uv sync` in this repo to get started. 2. For managing linters, static-analysis, and other tools, we use [pre-commit](https://pre-commit.com/#installation). Once Pre-commit is installed, run `pre-commit install` in this repo to install the hooks. Using pre-commit ensures PRs match the linting requirements of the codebase. @@ -9,7 +9,7 @@ ## Documentation Whenever possible, please add docstrings to your code! We use [numpy-style napoleon docstrings](https://sphinxcontrib-napoleon.readthedocs.io/en/latest/#google-vs-numpy). -To confirm docstrings are valid, build the docs by running `poetry run make html` in the `docs/` folder. +To confirm docstrings are valid, build the docs by running `uv run make html` in the `docs/` folder. I typically write dosctrings first, it will act as a guide to limit scope and encourage unit-testable code. Good docstrings include information like: diff --git a/.github/dependabot.yml b/.github/dependabot.yml index 91abb11..65b6c89 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -5,7 +5,19 @@ version: 2 updates: - - package-ecosystem: "pip" # See documentation for possible values + - package-ecosystem: "uv" # See documentation for possible values directory: "/" # Location of package manifests schedule: interval: "weekly" + groups: + # Batch minor/patch bumps into a single weekly PR; majors stay separate. + python-dependencies: + patterns: ["*"] + update-types: ["minor", "patch"] + - package-ecosystem: "github-actions" + directory: "/" + schedule: + interval: "weekly" + groups: + github-actions: + patterns: ["*"] diff --git a/.github/workflows/build_wheels.yaml b/.github/workflows/build_wheels.yaml index 2f08180..f74f4aa 100644 --- a/.github/workflows/build_wheels.yaml +++ b/.github/workflows/build_wheels.yaml @@ -3,54 +3,41 @@ name: Build Wheels on: workflow_dispatch: pull_request: + # Only build wheels on PRs when compiled code (or the build itself) changes. + paths: + - "**.pyx" + - "**.pxd" + - "pythontemplate/_c_src/**" + - "setup.py" + - "MANIFEST.in" + - "pyproject.toml" + - ".github/workflows/build_wheels.yaml" push: tags: - "v*.*.*" +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: ${{ github.event_name == 'pull_request' }} + jobs: build_sdist: name: "sdist" runs-on: ubuntu-latest - env: - PYTHON: 3.12 - POETRY_HOME: "~/poetry" steps: - name: Check out repository - uses: actions/checkout@v4 + uses: actions/checkout@v5 with: fetch-depth: 0 - - name: Set up python ${{ env.PYTHON }} - id: setup-python - uses: actions/setup-python@v5 - with: - python-version: ${{ env.PYTHON }} - - - name: Cache Poetry Install - uses: actions/cache@v4 - id: cached-poetry + - name: Install uv + uses: astral-sh/setup-uv@v6 with: - path: ${{ env.POETRY_HOME }} - key: poetry-cache-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('.github/workflows/build_wheels.yaml') }} - - - name: Install poetry - if: steps.cached-poetry.outputs.cache-hit != 'true' - uses: snok/install-poetry@v1 - - - name: Add Poetry to PATH # Needs to be separate from install-poetry because cache. - run: | - echo "$POETRY_HOME/bin" >> $GITHUB_PATH - - - name: Configure Poetry # Needs to be separate from install-poetry because cache. - run: | - poetry self add poetry-dynamic-versioning[plugin] - poetry config virtualenvs.create true - poetry config virtualenvs.in-project true + python-version: "3.13" - name: Build sdist - run: | - poetry build --format=sdist + run: uv build --sdist - uses: actions/upload-artifact@v4 with: @@ -64,13 +51,8 @@ jobs: fail-fast: false matrix: os: [windows-latest] - cibw_build: ["cp39-*", "cp310-*", "cp311-*", "cp312-*", "cp313-*"] - cibw_archs: ["AMD64", "x86", "ARM64"] - exclude: - - os: windows-latest - cibw_archs: "ARM64" - env: - PYTHON: 3.12 + cibw_build: ["cp310-*", "cp311-*", "cp312-*", "cp313-*", "cp314-*"] + cibw_archs: ["AMD64"] steps: - name: "Set environment variables (Windows)" @@ -84,22 +66,15 @@ jobs: shell: bash - name: Check out repository - uses: actions/checkout@v4 + uses: actions/checkout@v5 with: fetch-depth: 0 - - name: Set up python ${{ env.PYTHON }} - uses: actions/setup-python@v5 - id: setup-python - with: - python-version: ${{ env.PYTHON }} - - name: Build wheels - uses: pypa/cibuildwheel@v2.16.5 + uses: pypa/cibuildwheel@v3.2 env: CIBW_ARCHS: ${{ matrix.cibw_archs }} CIBW_BUILD: ${{ matrix.cibw_build }} - CIBW_TEST_SKIP: "*-win_arm64" CIBW_TEST_REQUIRES: pytest CIBW_TEST_COMMAND: pytest {package}/tests @@ -109,20 +84,18 @@ jobs: path: wheelhouse/*.whl build_wheels_linux: - name: "${{ matrix.os }} ${{ matrix.cibw_archs }} ${{ matrix.cibw_build }}" + name: "${{ matrix.os }} ${{ matrix.cibw_build }}" runs-on: ${{ matrix.os }} strategy: fail-fast: false matrix: - os: [ubuntu-latest] - cibw_build: ["cp39-*", "cp310-*", "cp311-*", "cp312-*", "cp313-*"] - cibw_archs: ["x86_64", "i686", "aarch64", "ppc64le"] - env: - PYTHON: 3.12 + # ubuntu-24.04-arm builds aarch64 wheels natively (much faster than QEMU). + os: [ubuntu-latest, ubuntu-24.04-arm] + cibw_build: ["cp310-*", "cp311-*", "cp312-*", "cp313-*", "cp314-*"] steps: - name: Check out repository - uses: actions/checkout@v4 + uses: actions/checkout@v5 with: fetch-depth: 0 @@ -131,29 +104,16 @@ jobs: run: echo "CIBW_BUILD_SANITIZED=$(echo '${{ matrix.cibw_build }}' | sed 's/\*/_/g')" >> $GITHUB_ENV shell: bash - - name: Set up QEMU - if: matrix.cibw_archs != 'x86_64' - uses: docker/setup-qemu-action@v3 - with: - platforms: all - - - name: Set up python ${{ env.PYTHON }} - uses: actions/setup-python@v5 - id: setup-python - with: - python-version: ${{ env.PYTHON }} - - name: Build wheels - uses: pypa/cibuildwheel@v2.16.5 + uses: pypa/cibuildwheel@v3.2 env: - CIBW_ARCHS: ${{ matrix.cibw_archs }} CIBW_BUILD: ${{ matrix.cibw_build }} CIBW_TEST_REQUIRES: pytest CIBW_TEST_COMMAND: pytest {package}/tests - uses: actions/upload-artifact@v4 with: - name: wheels-${{ matrix.os }}-${{ env.CIBW_BUILD_SANITIZED }}-${{ matrix.cibw_archs }} + name: wheels-${{ matrix.os }}-${{ env.CIBW_BUILD_SANITIZED }} path: wheelhouse/*.whl build_wheels_macos: @@ -162,15 +122,13 @@ jobs: strategy: fail-fast: false matrix: - os: [macos-13] - cibw_build: ["cp39-*", "cp310-*", "cp311-*", "cp312-*", "cp313-*"] - cibw_archs: ["x86_64"] - env: - PYTHON: 3.12 - SYSTEM_VERSION_COMPAT: 0 # https://github.com/actions/setup-python/issues/469#issuecomment-1192522949 + os: [macos-latest] + cibw_build: ["cp310-*", "cp311-*", "cp312-*", "cp313-*", "cp314-*"] + cibw_archs: ["arm64", "x86_64"] + steps: - name: Check out repository - uses: actions/checkout@v4 + uses: actions/checkout@v5 with: fetch-depth: 0 @@ -179,17 +137,13 @@ jobs: run: echo "CIBW_BUILD_SANITIZED=$(echo '${{ matrix.cibw_build }}' | sed 's/\*/_/g')" >> $GITHUB_ENV shell: bash - - name: Set up python ${{ env.PYTHON }} - uses: actions/setup-python@v5 - id: setup-python - with: - python-version: ${{ env.PYTHON }} - - name: Build wheels - uses: pypa/cibuildwheel@v2.16.5 + uses: pypa/cibuildwheel@v3.2 env: CIBW_ARCHS: ${{ matrix.cibw_archs }} CIBW_BUILD: ${{ matrix.cibw_build }} + # x86_64 wheels are cross-compiled on arm64 runners; their tests can't run natively. + CIBW_TEST_SKIP: "*-macosx_x86_64" CIBW_TEST_REQUIRES: pytest CIBW_TEST_COMMAND: pytest {package}/tests @@ -198,62 +152,6 @@ jobs: name: wheels-${{ matrix.os }}-${{ env.CIBW_BUILD_SANITIZED }}-${{ matrix.cibw_archs }} path: wheelhouse/*.whl - build_wheels_macos_arm64: - name: "${{ matrix.os }} ${{ matrix.cibw_archs }} ${{ matrix.cibw_build }}" - runs-on: ${{ matrix.os }} - strategy: - matrix: - os: [macos-13] - cibw_build: ["cp39-*", "cp310-*", "cp311-*", "cp312-*", "cp313-*"] - cibw_archs: ["arm64"] - - steps: - - name: Check out repository - uses: actions/checkout@v4 - with: - fetch-depth: 0 - - - uses: actions/setup-python@v5 - id: setup-python - with: - python-version: "3.12" - - - name: Build wheels - uses: pypa/cibuildwheel@v2.16.5 - env: - CIBW_BUILD: ${{ matrix.cibw_build }} - CIBW_ARCHS: ${{ matrix.cibw_archs }} - CIBW_TEST_SKIP: "*-macosx_arm64" - CIBW_TEST_REQUIRES: pytest - CIBW_TEST_COMMAND: pytest {package}/tests - CIBW_REPAIR_WHEEL_COMMAND: | - echo "Target delocate archs: {delocate_archs}" - - ORIGINAL_WHEEL={wheel} - - echo "Running delocate-listdeps to list linked original wheel dependencies" - delocate-listdeps --all $ORIGINAL_WHEEL - - echo "Renaming .whl file when architecture is 'macosx_arm64'" - RENAMED_WHEEL=${ORIGINAL_WHEEL//x86_64/arm64} - - echo "Wheel will be renamed to $RENAMED_WHEEL" - mv $ORIGINAL_WHEEL $RENAMED_WHEEL - - echo "Running delocate-wheel command on $RENAMED_WHEEL" - delocate-wheel --require-archs {delocate_archs} -w {dest_dir} -v $RENAMED_WHEEL - - echo "Running delocate-listdeps to list linked wheel dependencies" - WHEEL_SIMPLE_FILENAME="${RENAMED_WHEEL##*/}" - delocate-listdeps --all {dest_dir}/$WHEEL_SIMPLE_FILENAME - - echo "DONE." - - - uses: actions/upload-artifact@v4 - with: - name: wheels-${{ matrix.os }}-${{ matrix.cibw_build }}-${{ matrix.cibw_archs }} - path: ./wheelhouse/*.whl - upload_to_pypi: if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v') needs: @@ -262,9 +160,12 @@ jobs: "build_wheels_windows", "build_wheels_linux", "build_wheels_macos", - "build_wheels_macos_arm64", ] runs-on: ubuntu-latest + environment: pypi + permissions: + # Required for PyPI Trusted Publishing (OIDC); no API token needed. + id-token: write steps: - uses: actions/download-artifact@v4 with: @@ -274,6 +175,5 @@ jobs: - uses: pypa/gh-action-pypi-publish@release/v1 with: - password: ${{ secrets.PYPI_TOKEN }} - packages_dir: wheels/ - skip_existing: true + packages-dir: wheels/ + skip-existing: true diff --git a/.github/workflows/deploy.yaml b/.github/workflows/deploy.yaml index c9c12d6..553359a 100644 --- a/.github/workflows/deploy.yaml +++ b/.github/workflows/deploy.yaml @@ -9,61 +9,30 @@ on: jobs: build: runs-on: ubuntu-latest - env: - PYTHON: 3.12 - POETRY_HOME: "~/poetry" + environment: pypi + permissions: + contents: read + # Required for PyPI Trusted Publishing (OIDC); no API token needed. + id-token: write steps: - name: Check out repository - uses: actions/checkout@v4 + uses: actions/checkout@v5 with: fetch-depth: 0 # Includes getting tags - - name: Set up python ${{ env.PYTHON }} - id: setup-python - uses: actions/setup-python@v5 + - name: Install uv + uses: astral-sh/setup-uv@v6 with: - python-version: ${{ env.PYTHON }} - - - name: Cache Poetry Install - uses: actions/cache@v4 - id: cached-poetry - with: - path: ${{ env.POETRY_HOME }} - key: poetry-cache-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('.github/workflows/deploy.yaml') }} - - - name: Install poetry - uses: snok/install-poetry@v1 - if: steps.cached-poetry.outputs.cache-hit != 'true' - - - name: Add Poetry to PATH # Needs to be separate from install-poetry because cache. - run: | - echo "$POETRY_HOME/bin" >> $GITHUB_PATH - - - name: Configure Poetry # Needs to be separate from install-poetry because cache. - run: | - poetry self add poetry-dynamic-versioning[plugin] - poetry config virtualenvs.create true - poetry config virtualenvs.in-project true - - - name: Cache venv - uses: actions/cache@v4 - id: cached-venv - with: - path: .venv/ - key: venv-cache-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('.github/workflows/deploy.yaml') }} - - - name: Install project - run: poetry install --no-interaction + python-version: "3.13" + enable-cache: true - name: Build package - run: poetry build + run: uv build - name: Publish package if: github.event_name != 'workflow_dispatch' - run: | - poetry config pypi-token.pypi ${{ secrets.PYPI_TOKEN }} - poetry publish + run: uv publish - uses: actions/upload-artifact@v4 if: always() diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml index 97cc959..1059f7b 100644 --- a/.github/workflows/tests.yaml +++ b/.github/workflows/tests.yaml @@ -1,7 +1,6 @@ # Regular tests # -# Use this to ensure your tests are passing on every push and PR (skipped on -# pushes which only affect documentation). +# Use this to ensure your tests are passing on every push and PR. # # You should make sure you run jobs on at least the *oldest* and the *newest* # versions of python that your codebase is intended to support. @@ -14,7 +13,47 @@ on: - main pull_request: +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: ${{ github.event_name == 'pull_request' }} + jobs: + # Lint and docs don't depend on OS or python version; run them once. + lint: + timeout-minutes: 15 + runs-on: ubuntu-latest + steps: + - name: Check out repository + uses: actions/checkout@v5 + + - name: Install uv + uses: astral-sh/setup-uv@v6 + with: + python-version: "3.13" + enable-cache: true + + - name: Install library + run: uv sync --locked + + - name: Cache pre-commit + uses: actions/cache@v4 + with: + path: ~/.cache/pre-commit/ + key: pre-commit-${{ runner.os }}-${{ hashFiles('.pre-commit-config.yaml') }} + + # Lightweight hooks run on pre-commit.ci (with PR autofix); only the + # hooks that need the project's .venv run here. + - name: Pre-commit run (env-dependent hooks) + run: | + uv run pre-commit run --all-files --show-diff-on-failure --color=always creosote + uv run pre-commit run --all-files --show-diff-on-failure --color=always pyright + + #---------------------------------------------- + # make sure docs build + #---------------------------------------------- + - name: Build HTML docs + run: uv run sphinx-build -b html -W docs/source/ docs/build/html + test: timeout-minutes: 45 defaults: @@ -24,74 +63,24 @@ jobs: strategy: fail-fast: false matrix: - os: [ubuntu-latest, macos-13, windows-latest] - python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] + os: [ubuntu-latest, macos-latest, windows-latest] + python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"] env: OS: ${{ matrix.os }} PYTHON: ${{ matrix.python-version }} - POETRY_HOME: "~/poetry" steps: - - name: Set OS Environment Variables (Windows) - if: runner.os == 'Windows' - run: | - echo 'ACTIVATE_PYTHON_VENV=.venv/scripts/activate' >> $GITHUB_ENV - - - name: Set OS Environment Variables (not Windows) - if: runner.os != 'Windows' - run: | - echo 'ACTIVATE_PYTHON_VENV=.venv/bin/activate' >> $GITHUB_ENV - - name: Check out repository - uses: actions/checkout@v4 + uses: actions/checkout@v5 - - name: Set up python ${{ matrix.python-version }} - id: setup-python - uses: actions/setup-python@v5 + - name: Install uv + uses: astral-sh/setup-uv@v6 with: python-version: ${{ matrix.python-version }} - - - name: Cache Poetry Install - uses: actions/cache@v4 - id: cached-poetry - with: - path: ${{ env.POETRY_HOME }} - key: poetry-cache-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('.github/workflows/tests.yaml') }} - - - name: Install poetry - uses: snok/install-poetry@v1 - if: steps.cached-poetry.outputs.cache-hit != 'true' - - - name: Add Poetry to PATH # Needs to be separate from install-poetry because cache. - run: | - echo "$POETRY_HOME/bin" >> $GITHUB_PATH - - - name: Configure Poetry # Needs to be separate from install-poetry because cache. - run: | - poetry config virtualenvs.create true - poetry config virtualenvs.in-project true - poetry config installer.parallel ${{ runner.os != 'Windows' }} # Currently there seems to be some race-condition in windows - - - name: Cache venv - uses: actions/cache@v4 - id: cached-venv - with: - path: .venv/ - key: venv-cache-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('.github/workflows/tests.yaml') }} + enable-cache: true - name: Install library - run: poetry install --no-interaction - - - name: Cache pre-commit - uses: actions/cache@v4 - with: - path: ~/.cache/pre-commit/ - key: pre-commit-${{ runner.os }}-${{ env.pythonLocation }}-${{ hashFiles('.pre-commit-config.yaml') }} - - - name: Pre-commit run - run: | - source ${{ env.ACTIVATE_PYTHON_VENV }} - pre-commit run --show-diff-on-failure --color=always --all-files + run: uv sync --locked - name: Check tests folder existence id: check_test_files @@ -102,23 +91,14 @@ jobs: - name: Run tests if: steps.check_test_files.outputs.files_exists == 'true' run: | - source ${{ env.ACTIVATE_PYTHON_VENV }} - python -m pytest --cov=pythontemplate --cov-report term --cov-report xml --junitxml=testresults.xml - coverage report + uv run python -m pytest --cov=pythontemplate --cov-report term --cov-report xml --junitxml=testresults.xml + uv run coverage report - name: Upload coverage to Codecov if: steps.check_test_files.outputs.files_exists == 'true' - uses: codecov/codecov-action@v4 + uses: codecov/codecov-action@v5 with: token: ${{ secrets.CODECOV_TOKEN }} flags: unittests env_vars: OS,PYTHON name: Python ${{ matrix.python-version }} on ${{ runner.os }} - - #---------------------------------------------- - # make sure docs build - #---------------------------------------------- - - name: Build HTML docs - run: | - source ${{ env.ACTIVATE_PYTHON_VENV }} - sphinx-build -b html -W docs/source/ docs/build/html diff --git a/.gitignore b/.gitignore index 52fc888..88f95a8 100644 --- a/.gitignore +++ b/.gitignore @@ -244,6 +244,7 @@ Temporary Items # Cython pythontemplate/_c_extension.c pythontemplate/*.html +wheelhouse/ -# Poetry -poetry.toml +# uv +uv.toml diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index e843d89..96f290c 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,5 +1,16 @@ -exclude: ^(poetry.lock|.idea/) +ci: + autoupdate_schedule: weekly + # These hooks need the project's .venv, which doesn't exist on pre-commit.ci; + # they run in the GitHub Actions "lint" job instead. + skip: [pyright, creosote] + +exclude: ^(uv.lock|.idea/) repos: + - repo: https://github.com/astral-sh/uv-pre-commit + rev: "0.11.26" + hooks: + - id: uv-lock + - repo: https://github.com/astral-sh/ruff-pre-commit rev: "v0.12.4" hooks: diff --git a/.readthedocs.yaml b/.readthedocs.yaml index d76941f..a6c8a95 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -1,26 +1,24 @@ # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details -# Derived from: https://docs.readthedocs.io/en/stable/build-customization.html#install-dependencies-with-poetry +# Derived from: https://docs.readthedocs.io/en/stable/build-customization.html#install-dependencies-with-uv # Required version: 2 build: - os: "ubuntu-22.04" + os: "ubuntu-24.04" tools: - python: "3.10" + python: "3.12" jobs: - post_create_environment: - # Install poetry - # https://python-poetry.org/docs/#installing-manually - - pip install poetry - - poetry self add poetry-dynamic-versioning - post_install: - # Install dependencies with 'docs' dependency group - # https://python-poetry.org/docs/managing-dependencies/#dependency-groups - # VIRTUAL_ENV needs to be set manually for now. - # See https://github.com/readthedocs/readthedocs.org/pull/11152/ - - VIRTUAL_ENV=$READTHEDOCS_VIRTUALENV_PATH poetry install --without=dev --with=docs + pre_create_environment: + - asdf plugin add uv + - asdf install uv latest + - asdf global uv latest + create_environment: + - uv venv "${READTHEDOCS_VIRTUALENV_PATH}" + install: + # Install the project and its 'docs' dependency group. + - UV_PROJECT_ENVIRONMENT="${READTHEDOCS_VIRTUALENV_PATH}" uv sync --no-group dev # Build documentation in the docs/ directory with Sphinx sphinx: diff --git a/Dockerfile b/Dockerfile index 6164373..be3559f 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,35 +1,35 @@ -# syntax=docker/dockerfile:1.4.1 -FROM ubuntu:20.04 AS build +# syntax=docker/dockerfile:1 +FROM ubuntu:24.04 AS build -ENV PATH "/root/.local/bin/:$PATH" -ENV POETRY_INSTALLER_MAX_WORKERS 8 +COPY --from=ghcr.io/astral-sh/uv:0.11 /uv /uvx /bin/ + +# Use the system python and compile bytecode for faster container startup. +ENV UV_PYTHON_PREFERENCE=only-system \ + UV_COMPILE_BYTECODE=1 \ + UV_LINK_MODE=copy RUN apt-get update && apt-get install -y --no-install-recommends \ - python3 \ + python3 \ + python3-dev \ + python3-venv \ build-essential \ ca-certificates \ - ca-certificates \ - curl \ git \ - python3-dev \ - python3-venv\ && rm -rf /var/lib/apt/lists/* -RUN curl -sSL https://install.python-poetry.org | python3 - - COPY . /pythontemplate WORKDIR /pythontemplate -RUN poetry install --without=dev,docs \ +RUN uv sync --no-default-groups \ && rm -rf .git -FROM ubuntu:20.04 +FROM ubuntu:24.04 -ENV PATH ".venv/bin:$PATH" +ENV PATH="/pythontemplate/.venv/bin:$PATH" RUN apt-get update && apt-get install -y --no-install-recommends \ python3 \ diff --git a/MANIFEST.in b/MANIFEST.in new file mode 100644 index 0000000..56d9519 --- /dev/null +++ b/MANIFEST.in @@ -0,0 +1,3 @@ +include pythontemplate/_c_extension.pyx +include pythontemplate/cpythontemplate.pxd +recursive-include pythontemplate/_c_src *.c *.h diff --git a/README.rst b/README.rst index d6d0ad8..75426f5 100644 --- a/README.rst +++ b/README.rst @@ -34,11 +34,11 @@ Features * Features dependent if project is a library or a standalone project. -* `Poetry`_ support. +* `uv`_ support. - * If not installed, Poetry will automatically be installed when running ``bootstrap``. + * If not installed, uv will automatically be installed when running ``bootstrap``. - * `Poetry Dynamic Versioning`_ - Dynamically handles your project version based on git tags. + * `setuptools-scm`_ - Dynamically handles your project version based on git tags. * Optional command line interface boilerplate using Cyclopts_. @@ -68,6 +68,9 @@ Features * `Pyright `_ - Static type checker. + * On CI, lightweight hooks run on `pre-commit.ci`_, which also auto-fixes pull requests + and auto-updates hook versions weekly. Enable it for your repository at https://pre-commit.ci. + * `Docker`_ support for standalone projects. * GitHub Actions for: @@ -80,7 +83,18 @@ Features * Build and upload wheels to PyPI on semver tags ``vX.Y.Z``. - * Add your `PyPI API token`_ to your `GitHub secrets`_ for key ``PYPI_TOKEN``. + * Publishing uses a `PyPI Trusted Publisher`_ (OIDC); no API token or GitHub secret is required. + To set it up, go to PyPI -> Your account -> Publishing -> "Add a new pending publisher" and enter: + + * **PyPI Project Name**: your project name. + + * **Owner** / **Repository name**: your GitHub username and repository name. + + * **Workflow name**: ``build_wheels.yaml`` if using Cython, otherwise ``deploy.yaml``. + + * **Environment name**: ``pypi``. + + The first tagged release will then create the PyPI project automatically. * If using Cython, pre-built binary packages will be created for all major operating systems, python versions, and computer architectures. @@ -116,8 +130,8 @@ Replace any reference here to ``pythontemplate`` with your project name. 4. If adding type hints, update ``pythontemplate/_c_extension.pyi`` to reflect your ``.pyx`` implementation. -5. Optionally tweak ``build.py`` (runs at setup/installation) with compiler options. - The default ``build.py`` offers a good, working starting point for most projects and performs the following: +5. Optionally tweak ``setup.py`` (runs at setup/installation) with compiler options. + The default ``setup.py`` offers a good, working starting point for most projects and performs the following: a. Recursively searches for all C files in ``pythontemplate/_c_src/``. To change this action, modify the variable ``c_files``. @@ -131,13 +145,16 @@ Replace any reference here to ``pythontemplate`` with your project name. The logic checks for the environment variable ``CIBUILDWHEEL`` because we don't want to allow build failures in our CI when creating pre-built wheels that we upload to PyPI. + e. ``[tool.uv]`` in ``pyproject.toml`` sets ``cache-keys`` so that changes to Cython/C + sources trigger a rebuild on the next ``uv sync``. + 6. The Github Action workflow defined in ``.github/workflows/build_wheels.yaml`` will create pre-built binaries for all major Python versions, operating systems, and computer architectures. It will also create a Source Distribution (sdist). All of these distributions will be uploaded to the github action job page. On git semver tags (``vX.X.X``), they will be uploaded to PyPI. -When developing, you must re-run ``poetry-install`` to re-compile changes made in C/Cython code. +When developing, you must re-run ``uv sync`` to re-compile changes made in C/Cython code. The resulting, built Cython code will be importable from ``pythontemplate._c_extension``, so it may be good to add something like the following to your ``pythontemplate/__init__.py``: @@ -157,18 +174,19 @@ this template at https://github.com/BrianPugh/python-template . .. |GHA tests| image:: https://github.com/BrianPugh/python-template/workflows/tests/badge.svg :target: https://github.com/BrianPugh/python-template/actions?query=workflow%3Atests :alt: GHA Status -.. |Python compat| image:: https://img.shields.io/badge/>=python-3.9-blue.svg +.. |Python compat| image:: https://img.shields.io/badge/>=python-3.10-blue.svg .. _Codecov Dashboard: https://app.codecov.io/gh .. _Docker: https://www.docker.com .. _GitHub secrets: https://docs.github.com/en/actions/security-guides/encrypted-secrets -.. _Poetry: https://python-poetry.org +.. _uv: https://docs.astral.sh/uv/ .. _Pre-commit: https://pre-commit.com -.. _PyPI API token: https://pypi.org/help/#apitoken +.. _pre-commit.ci: https://pre-commit.ci +.. _PyPI Trusted Publisher: https://docs.pypi.org/trusted-publishers/ .. _ReadTheDocs Dashboard: https://readthedocs.org/dashboard/ .. _ReadTheDocs: https://readthedocs.org .. _Sphinx: https://www.sphinx-doc.org/en/master/ .. _token: https://docs.docker.com/docker-hub/access-tokens/ .. _Cython: https://cython.readthedocs.io/en/latest/ -.. _Poetry Dynamic Versioning: https://github.com/mtkennerly/poetry-dynamic-versioning +.. _setuptools-scm: https://github.com/pypa/setuptools-scm .. _Cyclopts: https://github.com/BrianPugh/cyclopts diff --git a/bootstrap b/bootstrap index f60c7d2..727b647 100755 --- a/bootstrap +++ b/bootstrap @@ -17,7 +17,7 @@ parser = ArgumentParser(description="Prepares python project repository.") parser.add_argument("--no-verify", action="store_true", help="Disable input verification.") cli_args = parser.parse_args() -POETRY_BIN = shutil.which("poetry") +UV_BIN = shutil.which("uv") REPO = Path(__file__).parent @@ -51,7 +51,7 @@ class DocFormat(Enum): raise BadResponseError("is not a valid choice.") -def _check_pypi_name_available(package_name) -> Union[None, bool]: +def _check_pypi_name_available(package_name) -> None | bool: try: urllib.request.urlopen(f"https://pypi.org/pypi/{package_name}/json") # noqa: S310 except urllib.error.HTTPError as e: @@ -82,30 +82,25 @@ def run(cmds, **kwargs): subprocess.run(cmds, capture_output=False, check=True, **kwargs) # noqa: S603 -def check_and_install_poetry(): - global POETRY_BIN - if not POETRY_BIN: - print("poetry not found. Installing...") +def check_and_install_uv(): + global UV_BIN + if not UV_BIN: + print("uv not found. Installing...") run( # noqa: S604 - "curl -sSL https://install.python-poetry.org | python3 -", + "curl -LsSf https://astral.sh/uv/install.sh | sh", shell=True, # noqa: S604 ) - POETRY_BIN = str(Path("~/.local/bin/poetry").expanduser()) + UV_BIN = str(Path("~/.local/bin/uv").expanduser()) - # Check if the poetry installation is potentially broken; see issue #46 + # Check if the uv installation is potentially broken. try: - subprocess.check_output(["poetry", "--version"]) # noqa: S603, S607 + subprocess.check_output([UV_BIN, "--version"]) # noqa: S603 except subprocess.CalledProcessError: print( - f"{col.FAIL}\n\nPoetry installation failed healthcheck. Manual debugging required. It is unlikely that python-template's bootstrapping is at fault.\n{col.ENDC}" + f"{col.FAIL}\n\nuv installation failed healthcheck. Manual debugging required. It is unlikely that python-template's bootstrapping is at fault.\n{col.ENDC}" ) sys.exit(1) - response = subprocess.check_output(["poetry", "self", "show", "plugins"]).decode() # noqa: S603, S607 - if "poetry-dynamic-versioning" not in response: - # Add necessary poetry plugins - run(["poetry", "self", "add", "poetry-dynamic-versioning[plugin]"]) - def camel_to_snake(s): return "".join(["_" + c.lower() if c.isupper() else c for c in s]).lstrip("_") @@ -231,7 +226,7 @@ def add_to_pyproject(after, new_line, replace=False): def main(): - check_and_install_poetry() + check_and_install_uv() replacements: dict[str, str] = { "CURRENT_YEAR_HERE": str(date.today().year), @@ -312,27 +307,14 @@ def main(): remove_lines_in_file("pyproject.toml", 'pythontemplate = "pythontemplate.cli.main:run_app"') if use_cython: - # Forgo nice simple poetry action for CIBuildWheel. + # Forgo the simple deploy action; CIBuildWheel (build_wheels.yaml) handles deployment. Path(".github/workflows/deploy.yaml").unlink() - - add_to_pyproject( - 'requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning>=1.0.1"]', - 'requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning>=1.0.1", "Cython>=3.0.0", "setuptools>=61.0"]', - replace=True, - ) - add_to_pyproject( - "[tool.poetry.group.dev.dependencies]", - 'cython = ">=1.0.0"', - ) - add_to_pyproject( - "[tool.poetry.build]", - "script = 'build.py'", - ) else: # Delete cython-related files - paths_to_delete: list[Union[str, Path]] = [ + paths_to_delete: list[str | Path] = [ ".github/workflows/build_wheels.yaml", - "build.py", + "setup.py", + "MANIFEST.in", "pythontemplate/_c_src", "pythontemplate/_c_extension.pyx", "pythontemplate/cpythontemplate.pxd", @@ -347,13 +329,29 @@ def main(): else: shutil.rmtree(str(path_to_delete)) + # Remove cython-related configuration from pyproject.toml + add_to_pyproject( + 'requires = ["setuptools>=77", "setuptools-scm>=8", "cython>=3.0.3"]', + 'requires = ["setuptools>=77", "setuptools-scm>=8"]', + replace=True, + ) + remove_lines_in_file( + "pyproject.toml", + ' "cython>=3.0.3",', + "# Rebuild the Cython extension whenever its sources change.", + ' { file = "setup.py" },', + ' { file = "pythontemplate/_c_extension.pyx" },', + ' { file = "pythontemplate/cpythontemplate.pxd" },', + ' { file = "pythontemplate/_c_src/**/*" },', + ) + (REPO / "README.rst").unlink() # Delete python-template's README if doc_format == DocFormat.MARKDOWN: (REPO / "README_TEMPLATE.md").replace(REPO / "README.md") (REPO / "README_TEMPLATE.rst").unlink() add_to_pyproject( - "[tool.poetry.group.docs.dependencies]", - 'myst-parser = {extras = ["linkify"], version = "^3.0.1"}', + "docs = [", + ' "myst-parser[linkify]>=3.0.1",', ) replacements[":start-after: inclusion-marker-do-not-remove"] = ":parser: myst_parser.sphinx_" elif doc_format == DocFormat.RESTRUCTURED_TEXT: @@ -381,6 +379,8 @@ def main(): files.append(Path("pyproject.toml")) files.append(Path(".gitignore")) files.append(Path("docs/source/index.rst")) + if use_cython: + files.append(Path("MANIFEST.in")) if not is_library: files.append(Path("Dockerfile")) @@ -395,16 +395,13 @@ def main(): # Move the app folder (REPO / "pythontemplate").replace(REPO / replacements["pythontemplate"]) - run([POETRY_BIN, "config", "virtualenvs.in-project", "true", "--local"]) - if not include_cli: - run([POETRY_BIN, "remove", "cyclopts"]) - run([POETRY_BIN, "remove", "rich"]) + run([UV_BIN, "remove", "cyclopts", "rich"]) - run([POETRY_BIN, "update"]) - run([POETRY_BIN, "install"]) - run(["poetry", "run", "python", "-m", "pre_commit", "install"]) - run(["poetry", "run", "python", "-m", "pre_commit", "autoupdate"]) + run([UV_BIN, "lock", "--upgrade"]) + run([UV_BIN, "sync"]) + run([UV_BIN, "run", "pre-commit", "install"]) + run([UV_BIN, "run", "pre-commit", "autoupdate"]) # Delete this script Path(__file__).unlink() diff --git a/build.py b/build.py deleted file mode 100644 index 04ab171..0000000 --- a/build.py +++ /dev/null @@ -1,78 +0,0 @@ -import os -import shutil -from pathlib import Path - -# Uncomment if library can still function if extensions fail to compile (e.g. slower, python fallback). -# Don't allow failure if cibuildwheel is running. -# allowed_to_fail = os.environ.get("CIBUILDWHEEL", "0") != "1" -allowed_to_fail = False - - -def build_cython_extensions(): - # when using setuptools, you should import setuptools before Cython, - # otherwise, both might disagree about the class to use. - from setuptools import Extension # noqa: I001 - from setuptools.dist import Distribution # noqa: I001 - import Cython.Compiler.Options # pyright: ignore [reportMissingImports] - from Cython.Build import build_ext, cythonize # pyright: ignore [reportMissingImports] - - Cython.Compiler.Options.annotate = True - - if os.name == "nt": # Windows - extra_compile_args = [ - "/O2", - ] - else: # UNIX-based systems - extra_compile_args = [ - "-O3", - "-Werror", - "-Wno-unreachable-code-fallthrough", - "-Wno-deprecated-declarations", - "-Wno-parentheses-equality", - "-Wno-unreachable-code", # TODO: This should no longer be necessary with Cython>=3.0.3 - ] - extra_compile_args.append("-UNDEBUG") # Cython disables asserts by default. - # Relative to project root director - include_dirs = [ - "pythontemplate/", - "pythontemplate/_c_src", - ] - - c_files = [str(x) for x in Path("pythontemplate/_c_src").rglob("*.c")] - extensions = [ - Extension( - # Your .pyx file will be available to cpython at this location. - "pythontemplate._c_extension", - [ - # ".c" and ".pyx" source file paths - "pythontemplate/_c_extension.pyx", - *c_files, - ], - include_dirs=include_dirs, - extra_compile_args=extra_compile_args, - language="c", - ), - ] - - include_dirs = set() - for extension in extensions: - include_dirs.update(extension.include_dirs) - include_dirs = list(include_dirs) - - ext_modules = cythonize(extensions, include_path=include_dirs, language_level=3, annotate=True) - dist = Distribution({"ext_modules": ext_modules}) - cmd = build_ext(dist) - cmd.ensure_finalized() - cmd.run() - - for output in cmd.get_outputs(): - output = Path(output) - relative_extension = output.relative_to(cmd.build_lib) - shutil.copyfile(output, relative_extension) - - -try: - build_cython_extensions() -except Exception: - if not allowed_to_fail: - raise diff --git a/docs/source/Installation.rst b/docs/source/Installation.rst index 878ca78..6ab7a68 100644 --- a/docs/source/Installation.rst +++ b/docs/source/Installation.rst @@ -1,7 +1,7 @@ Installation ============ -pythontemplate requires Python ``>=3.9`` and can be installed from pypi via: +pythontemplate requires Python ``>=3.10`` and can be installed from pypi via: .. code-block:: bash @@ -14,10 +14,10 @@ To install directly from github, you can run: python -m pip install git+https://github.com/GIT_USERNAME/GIT_REPONAME.git -For development, its recommended to use Poetry: +For development, its recommended to use uv: .. code-block:: bash git clone https://github.com/GIT_USERNAME/GIT_REPONAME.git cd pythontemplate - 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"B905", # zip strict=True; remove once python <3.10 support is dropped. "D100", "D101", "D102", @@ -174,13 +184,13 @@ staticmethod-decorators = [ ] [tool.codespell] -skip = 'poetry.lock,' +skip = 'uv.lock,' [tool.creosote] venvs=[".venv"] paths=["pythontemplate"] deps-file="pyproject.toml" -sections=["tool.poetry.dependencies"] +sections=["project.dependencies"] exclude-deps =[ "rich", "typing-extensions", diff --git a/pythontemplate/__init__.py b/pythontemplate/__init__.py index c6d2208..eab3d22 100644 --- a/pythontemplate/__init__.py +++ b/pythontemplate/__init__.py @@ -1,4 +1,9 @@ -# Don't manually change, let poetry-dynamic-versioning handle it. -__version__ = "0.0.0" +# Version is derived from git tags by setuptools-scm at build-time. +from importlib.metadata import PackageNotFoundError, version + +try: + __version__ = version("pythontemplate") +except PackageNotFoundError: + __version__ = "0.0.0" __all__ = [] diff --git a/setup.py b/setup.py new file mode 100644 index 0000000..994b639 --- /dev/null +++ b/setup.py @@ -0,0 +1,57 @@ +"""Builds the Cython extension; all other packaging configuration is in pyproject.toml.""" + +import os +from pathlib import Path + +import Cython.Compiler.Options +from Cython.Build import cythonize +from setuptools import Extension, setup + +Cython.Compiler.Options.annotate = True + +# Set to True if the library can still function when extensions fail to compile +# (e.g. slower, python fallback). 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