From 783977f91470d767d3d61321b46e28bfc2e1e7f6 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Wed, 1 Jul 2026 11:14:44 +0000
Subject: [PATCH] Bump the uv group with 13 updates

---
updated-dependencies:
- dependency-name: bioio
  dependency-version: 3.4.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: bioio-ome-zarr
  dependency-version: 3.5.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: matplotlib
  dependency-version: 3.11.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: jax
  dependency-version: 0.10.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: torch
  dependency-version: 2.12.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: trame-vtk
  dependency-version: 2.11.13
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: vortex-data
  dependency-version: 0.75.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: poethepoet
  dependency-version: 0.47.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: pytest
  dependency-version: 9.1.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: pydata-sphinx-theme
  dependency-version: 0.19.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: ipykernel
  dependency-version: 7.3.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: jupyterlab
  dependency-version: 4.6.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: jupytext
  dependency-version: 1.19.4
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: uv
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 uv.lock | 274 +++++++++++++++++++++++++++++---------------------------
 1 file changed, 141 insertions(+), 133 deletions(-)

diff --git a/uv.lock b/uv.lock
index 5a4e6b2..e34298f 100644
--- a/uv.lock
+++ b/uv.lock
@@ -333,7 +333,7 @@ wheels = [
 
 [[package]]
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-version = "3.3.0"
+version = "3.4.0"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "bioio-base" },
@@ -342,14 +342,14 @@ dependencies = [
     { name = "ome-types", extra = ["lxml"] },
     { name = "semver" },
 ]
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+sdist = { url = "https://files.pythonhosted.org/packages/46/77/997629e256236442e2efb6e81c5347506d585f520e91a8fc45bbb9e71345/bioio-3.4.0.tar.gz", hash = "sha256:16d4594ac6d0adf36cc7c7c81668dbfa49a22604ef951b479174c9a6a02e0be5", size = 61232, upload-time = "2026-06-24T18:27:10.745Z" }
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+    { url = "https://files.pythonhosted.org/packages/95/5e/dda19fde262f74c310602e3c85f2a88fa591fb417c26a93a7d878e28c7f4/bioio-3.4.0-py3-none-any.whl", hash = "sha256:b44edbd7abac857ad70933aaa4d24b585f8690972230744220d79128e141ffdf", size = 60024, upload-time = "2026-06-24T18:27:09.072Z" },
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-version = "3.3.0"
+version = "3.4.0"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "dask", extra = ["array", "distributed"] },
@@ -359,9 +359,9 @@ dependencies = [
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     { name = "xarray" },
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@@ -388,7 +388,7 @@ wheels = [
 
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+version = "3.5.1"
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@@ -399,9 +399,9 @@ dependencies = [
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@@ -1500,7 +1500,7 @@ wheels = [
 
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@@ -1659,7 +1672,7 @@ wheels = [
 
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@@ -1667,10 +1680,11 @@ dependencies = [
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