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Growth conditions for 10 records + dark-mode contrast fix + page regen #203

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Merged
realmarcin merged 1 commit into from
Jul 6, 2026
Merged

Growth conditions for 10 records + dark-mode contrast fix + page regen #203

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946 changes: 908 additions & 38 deletions docs/browser.html
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48 changes: 5 additions & 43 deletions docs/communities/AMD_Acidophile_Heterotroph_Network.html
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Original file line number Diff line number Diff line change
Expand Up @@ -177,7 +177,8 @@
}

.interaction-flow {
background: #fafafa;
background: var(--background);
color: var(--text);
border-left: 3px solid var(--primary);
padding: 1rem;
margin: 1rem 0;
Expand All @@ -199,7 +200,8 @@
}

.evidence-item {
background: #fefce8;
background: var(--background);
color: var(--text);
border-left: 3px solid #ca8a04;
padding: 0.75rem;
margin: 0.5rem 0;
Expand Down Expand Up @@ -381,7 +383,7 @@ <h1>AMD Acidophile Heterotroph Network</h1>
<div class="metadata-item">
<span class="metadata-label">Community ID</span>
<span class="metadata-value">
<code style="background: #f1f5f9; padding: 0.25rem 0.5rem; border-radius: 4px; font-size: 0.9rem;">CommunityMech:000001</code>
<code style="background: var(--border); color: var(--text); padding: 0.25rem 0.5rem; border-radius: 4px; font-size: 0.9rem;">CommunityMech:000001</code>
</span>
</div>

Expand Down Expand Up @@ -849,12 +851,6 @@ <h3>Organic Carbon Scavenging and Remineralization</h3>
<p><strong>Biological Processes:</strong></p>
<ul>

<li>
organic substance catabolic process
(<a href="http://amigo.geneontology.org/amigo/term/GO:1901575"
class="term-link" target="_blank" rel="noopener noreferrer">GO:1901575</a>)
</li>

<li>
aerobic respiration
(<a href="http://amigo.geneontology.org/amigo/term/GO:0009060"
Expand Down Expand Up @@ -946,12 +942,6 @@ <h3>Ferric Iron Reduction and Ferrous Iron Regeneration</h3>
<p><strong>Biological Processes:</strong></p>
<ul>

<li>
oxidation-reduction process
(<a href="http://amigo.geneontology.org/amigo/term/GO:0055114"
class="term-link" target="_blank" rel="noopener noreferrer">GO:0055114</a>)
</li>

<li>
iron ion transport
(<a href="http://amigo.geneontology.org/amigo/term/GO:0006826"
Expand Down Expand Up @@ -1048,12 +1038,6 @@ <h3>Heterotrophic Iron Oxidation by Ferrimicrobium</h3>
<p><strong>Biological Processes:</strong></p>
<ul>

<li>
oxidation-reduction process
(<a href="http://amigo.geneontology.org/amigo/term/GO:0055114"
class="term-link" target="_blank" rel="noopener noreferrer">GO:0055114</a>)
</li>

<li>
iron ion transport
(<a href="http://amigo.geneontology.org/amigo/term/GO:0006826"
Expand Down Expand Up @@ -1236,12 +1220,6 @@ <h3>Photoheterotrophic Carbon Cycling</h3>
class="term-link" target="_blank" rel="noopener noreferrer">GO:0015979</a>)
</li>

<li>
organic substance catabolic process
(<a href="http://amigo.geneontology.org/amigo/term/GO:1901575"
class="term-link" target="_blank" rel="noopener noreferrer">GO:1901575</a>)
</li>

</ul>


Expand Down Expand Up @@ -1310,12 +1288,6 @@ <h3>Complex Polysaccharide Degradation</h3>
class="term-link" target="_blank" rel="noopener noreferrer">GO:0000272</a>)
</li>

<li>
organic substance catabolic process
(<a href="http://amigo.geneontology.org/amigo/term/GO:1901575"
class="term-link" target="_blank" rel="noopener noreferrer">GO:1901575</a>)
</li>

</ul>


Expand Down Expand Up @@ -1668,8 +1640,6 @@ <h2>Environmental Factors</h2>
var processes = [];


processes.push("organic substance catabolic process");

processes.push("aerobic respiration");

processes.push("nitrogen compound metabolic process");
Expand Down Expand Up @@ -1720,8 +1690,6 @@ <h2>Environmental Factors</h2>
var processes = [];


processes.push("oxidation-reduction process");

processes.push("iron ion transport");

processes.push("anaerobic respiration");
Expand Down Expand Up @@ -1770,8 +1738,6 @@ <h2>Environmental Factors</h2>
var processes = [];


processes.push("oxidation-reduction process");

processes.push("iron ion transport");

processes.push("heterotrophy");
Expand Down Expand Up @@ -1870,8 +1836,6 @@ <h2>Environmental Factors</h2>

processes.push("photosynthesis");

processes.push("organic substance catabolic process");


var evidenceCount = 1;

Expand Down Expand Up @@ -1918,8 +1882,6 @@ <h2>Environmental Factors</h2>

processes.push("polysaccharide catabolic process");

processes.push("organic substance catabolic process");


var evidenceCount = 2;

Expand Down
35 changes: 7 additions & 28 deletions docs/communities/AMD_Nitrososphaerota_Archaeal.html
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Original file line number Diff line number Diff line change
Expand Up @@ -177,7 +177,8 @@
}

.interaction-flow {
background: #fafafa;
background: var(--background);
color: var(--text);
border-left: 3px solid var(--primary);
padding: 1rem;
margin: 1rem 0;
Expand All @@ -199,7 +200,8 @@
}

.evidence-item {
background: #fefce8;
background: var(--background);
color: var(--text);
border-left: 3px solid #ca8a04;
padding: 0.75rem;
margin: 0.5rem 0;
Expand Down Expand Up @@ -381,7 +383,7 @@ <h1>AMD Nitrososphaerota Archaeal Community</h1>
<div class="metadata-item">
<span class="metadata-label">Community ID</span>
<span class="metadata-value">
<code style="background: #f1f5f9; padding: 0.25rem 0.5rem; border-radius: 4px; font-size: 0.9rem;">CommunityMech:000002</code>
<code style="background: var(--border); color: var(--text); padding: 0.25rem 0.5rem; border-radius: 4px; font-size: 0.9rem;">CommunityMech:000002</code>
</span>
</div>

Expand Down Expand Up @@ -873,8 +875,8 @@ <h3>Nitrite Oxidation to Nitrate by Nitrospira</h3>

<li>
nitrite oxidoreductase activity
(<a href="http://amigo.geneontology.org/amigo/term/GO:0050151"
class="term-link" target="_blank" rel="noopener noreferrer">GO:0050151</a>)
(<a href="http://amigo.geneontology.org/amigo/term/GO:0016661"
class="term-link" target="_blank" rel="noopener noreferrer">GO:0016661</a>)
</li>

</ul>
Expand Down Expand Up @@ -954,23 +956,6 @@ <h3>Organic Matter Detoxification by Ferroplasma</h3>



<p><strong>Biological Processes:</strong></p>
<ul>

<li>
organic substance catabolic process
(<a href="http://amigo.geneontology.org/amigo/term/GO:1901575"
class="term-link" target="_blank" rel="noopener noreferrer">GO:1901575</a>)
</li>

<li>
oxidation-reduction process
(<a href="http://amigo.geneontology.org/amigo/term/GO:0055114"
class="term-link" target="_blank" rel="noopener noreferrer">GO:0055114</a>)
</li>

</ul>




Expand Down Expand Up @@ -1578,12 +1563,6 @@ <h2>Environmental Factors</h2>

var processes = [];


processes.push("organic substance catabolic process");

processes.push("oxidation-reduction process");


var evidenceCount = 2;

nodes.push({
Expand Down
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