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Pull requests: DataBiosphere/azul

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Pull requests list

Handle unreferenced file objects ("garbage") in mirror bucket (#7135)
#8139 opened Jun 25, 2026 by hannes-ucsc Member Loading… 100+
@hannes-ucsc
2
Fix: OutOfMemory error in mirror Lambda function (#7730)
#8137 opened Jun 24, 2026 by achave11-ucsc Member • Draft 100+
@achave11-ucsc
2
Bump msgpack from 1.1.2 to 1.2.1 dependencies [subject] External software packages that the system depends on python Pull requests that update python code
#8136 opened Jun 23, 2026 by dependabot Bot Loading…
@nadove-ucsc
1
Fix: Brittle coupling between config.data_browser_domain and .browser_sites (#8062)
#8129 opened Jun 23, 2026 by nadove-ucsc Contributor Loading… 100+
1
@dsotirho-ucsc @nadove-ucsc
3
Fix: GH Action schedule failed to create promotion ticket (#8041) upgrade [process] PR includes commit requiring manual upgrade
#8110 opened Jun 11, 2026 by achave11-ucsc Member • Draft 100+
1
@achave11-ucsc @dsotirho-ucsc
3
Fix: False-positive SQL Injection finding (DataBiosphere/azul-private#387)
#8089 opened Jun 8, 2026 by achave11-ucsc Member Loading… 100+
@achave11-ucsc
5
Fix: File.size should not be optional (#8024) API API change affecting callers
#8081 opened Jun 3, 2026 by nadove-ucsc Contributor Loading… 100+
1
@hannes-ucsc @nadove-ucsc
7
Organize curl downloads by dataset (#7926)
#8056 opened May 27, 2026 by dsotirho-ucsc Contributor • Draft 100+
1
@dsotirho-ucsc
3
Fix: Redundant implementations of file URLs and mirror URIs (#8042)
#8043 opened May 21, 2026 by nadove-ucsc Contributor • Draft 100+
1
@nadove-ucsc
2
Fix: curl manifest futilely includes external LungMAP files (#8027) 3 reviews [process] Lead requested changes thrice
#8030 opened May 15, 2026 by nadove-ucsc Contributor Loading… 100+
1
@nadove-ucsc
23
Cover query service with mypy (#6821) 1 review [process] Lead requested changes once partial [process] PR is does not completely resolve associated ticket
#7916 opened Apr 8, 2026 by nadove-ucsc Contributor Loading… 100+
1
@nadove-ucsc
8
Fix: Manifest IT fails with pinned seed (#7835)
#7850 opened Mar 10, 2026 by nadove-ucsc Contributor Loading… 100+
1
@nadove-ucsc
7
Fix: OpenSearch queries are huge (azul-private#316) 1 review [process] Lead requested changes once
#7775 opened Feb 12, 2026 by nadove-ucsc Contributor Loading… 100+
@nadove-ucsc
13
OpenSearch queries include many redundant source IDs (#7644)
#7727 opened Jan 29, 2026 by nadove-ucsc Contributor • Draft 100+
1
@nadove-ucsc
1
Fix: Accumulator overflow during aggregation (#6793) 1 review [process] Lead requested changes once API API change affecting callers reindex:anvildev [process] PR requires reindexing anvildev reindex:anvilprod [process] PR requires reindexing anvilprod reindex:dev [process] PR requires reindexing dev reindex:prod [process] PR requires reindexing prod
#7641 opened Dec 12, 2025 by dsotirho-ucsc Contributor Loading… 100+
1
@dsotirho-ucsc
47
Make GitLab instance CIS level 2 compliant (#5990)
#6694 opened Nov 8, 2024 by dsotirho-ucsc Contributor • Draft 100+
1
@dsotirho-ucsc
2
Fix: Can't use curl to download a single manifest in one invocation (#5918) 4+ reviews [process] Lead requested changes four times or more API API change affecting callers
#6099 opened Mar 26, 2024 by dsotirho-ucsc Contributor Loading… 100+
1
@dsotirho-ucsc
107
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