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Nextflow 26.04.3 and strict parser migration, other refactoring
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
This reverts commit 9e398cf.
Implement changes from quarto-notebooks branch
… duplicate_count). Update samplesheet to add 'alias' column, which is a sample's short name to be used for display purposes in notebooks. Added parameters to nextflow_schema.json.
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
Init channel-based reports
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