Skip to content

Improve projection notebook#2

Open
JeanMainguy wants to merge 2 commits into
mainfrom
improve_projection
Open

Improve projection notebook#2
JeanMainguy wants to merge 2 commits into
mainfrom
improve_projection

Conversation

@JeanMainguy

Copy link
Copy Markdown
Member

Projection in PPanGGOLiN 2.3.0 can (temporarly) fail when using pangenomes generated with older PPanGGOLiN versions see (labgem/PPanGGOLiN#381). To avoid this compatibility issue, the tutorial now uses a newer PanGBank release.

  • Updated pangenome retrieval to use PanGBank collection release 2.0.0 instead of 1.0.0.
  • Added contextual markdown cells across the Projection notebook to better explain each step of the workflow.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant